![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_01077.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 281aa MW: 32034.9 Da PI: 8.0246 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.4 | 2e-51 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lp+GfrFhPtdeelv++yL++k++++++++ vi+e+d+yk++Pw+Lp k +ekewyfFs+rd+ky++g+r+nra+ sgyWkat Rsa1.0_01077.1_g00004.1 7 LPAGFRFHPTDEELVKFYLCRKCASEQISA-PVIAEIDLYKFNPWELPDKSLYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKAT 91 799*************************99.89***************6666789******************************* PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g dk++ + ++ g+kk Lvfy g+apkg kt+W+mheyrl Rsa1.0_01077.1_g00004.1 92 GADKPIGK--PKTLGIKKALVFYAGKAPKGIKTNWIMHEYRL 131 ******98..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-60 | 3 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.243 | 7 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-27 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 281 aa Download sequence Send to blast |
MKAELNLPAG FRFHPTDEEL VKFYLCRKCA SEQISAPVIA EIDLYKFNPW ELPDKSLYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKPIGKP KTLGIKKALV FYAGKAPKGI 120 KTNWIMHEYR LANVDRSASV HKKNNLRLDD WVLCRIYNKK GTMEKYYPTD EKPRTITDHS 180 SSPFDTSVSS YPTLQEDDSS SSGGRVVSPD AREVQSEPKW GELENAFDTS MFGGGSMDLL 240 QQSEAAFVPQ FLYQPSTDYF NSWQDTQEQK PFLNWSFGPQ G |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-84 | 2 | 165 | 10 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY245883 | 0.0 | AY245883.1 Brassica napus NAC-domain protein 5-8 (NAC5-8) mRNA, complete cds. | |||
GenBank | KF738275 | 0.0 | KF738275.1 Brassica napus NAC transcription factor 81 (NAC81.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873383.1 | 1e-179 | hypothetical protein ARALYDRAFT_908859 | ||||
Swissprot | Q9C598 | 1e-179 | NAC81_ARATH; Protein ATAF2 | ||||
TrEMBL | A0A087G5T1 | 1e-179 | A0A087G5T1_ARAAL; Uncharacterized protein | ||||
TrEMBL | D7M208 | 1e-179 | D7M208_ARALL; Putative uncharacterized protein | ||||
STRING | scaffold_600916.1 | 1e-178 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G08790.1 | 1e-170 | NAC family protein |